Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015839479.1_cds_XP_016507310.1_20449
CDS Infomation

[gene=LOC107824996] [db_xref=GeneID:107824996] [protein=chlorophyllide a oxygenase, chloroplastic-like] [protein_id=XP_016507310.1] [location=complement(join(113099..113263,113852..114146,114831..114943,115047..115231,115380..115527,115767..116042,116536..116640,116883..117119,117660..117740))] [gbkey=CDS]
Sequence

ATGTCCGCCATTGCTACTTCTGCTGCTCTCTCTTTTCCTTTCTCTTTCTGCCGTTCTACC
AAGACTTTTGCTACAAGAAAGTGTTTCAAAGGGGGATTTGGAGTGTTTGCAGTGTATGAG
GAGGCAGGTGAGTTAACAAACAAGAAAAGCTCCTGGTTGACACTCTTTGATGTGGAAGAT
CCAAGGTCAAAATTTCCTCAGTCTAAAGGCAAGTTCCTGGATGCAAATCAAGCTTTAGAA
GTTGCTAGATTTGATATACAATATTGTGATTGGCGAGCTCGGCAAGATGTATTAACCATA
ATGCTCCTGCACGAAAAGGTTGTGGAAGTATTGAATCCTCTGGCACGTGAGTACAAATCT
ATTGGAACCATGAAGAAGGAACTAGCAGAGTTACAAGGAGCACTTTCTCAGGCTCATAAA
GAGGTACATATATCTGAGGTGCGGGTTTCTGCTGCTTTAGATAAGCTAGCTCACATGGAA
GCATTGGTTAATGATAGGCTGCTTCCGGAGAGGAGTGCAGAAGAATCAGATTGCCCGTCT
TCCTCCACCGGTACGTCTACAGTATCTAGAGATACTGTTAAAGGCAAGCAGCCTAGGAGA
ACCCTCAATGTGTCAGGTCCGGTCCAAGATTACAGCTCTCATTTGAAGAACTTTTGGTAT
CCTGTCGCTTTTTCTGCTGATGTTAAGGAAGACACAATGACACCAATTGATTGCTTTGAG
GAACCATGGGTGATTTTTCGTGGGAAAGATGGAAAACCTGGATGTGTCCGGAACACATGT
GCACATAGAGCCTGCCCCCTTCATTTGGGTTCAGTTAATGAGGGTCGCATCCAATGTCCT
TATCATGGGTGGGAATATTCAACAGACGGAAAATGTGAGAAAATGCCATCAACTAAATTT
CTGAATGTCAAGATCAAAGCTCTGCCATGCTTTGAGCAAGAGGGAATGATATGGATTTGG
CCTGGAAATGATCCTCCTGCAGCTACTCTTCCTTCTTTACTGCCACCTTCTGGATTTCAA
ATCCATGCAGAGATTGTTATTGAACTTCCAGTGGAACATGGGCTACTTTTGGACAATCTG
TTGGATCTTGCACATGCTCCTTTCACCCATACGTCTACATTTGCTAAAGGATGGACTGTC
CCAAGCTTTGTAAAATTTTTGACTCCTGCATCTGGTCTTCAAGGATATTGGGATCCCTAT
CCAATAGATATGGAATTTCGACCACCTTGTATAGTTCTATCAACCATTGGAATCTCAAAG
CCAGGCAAGTTGGAAGGGCAGAGTACCAAAGAGTGCTCTACACACCTACACCAACTTCAT
GTATGTTTACCTGCATCTAAACAGAAGACAAGGTTGTTATATAGGATGTCACTGGATTTT
GCTCCCGTGCTAAAACACATCCCTTTCATGCAATACGTGTGGAGGCATTTTGCTGAACAG
GTTTTAAACGAAGACCTACGGCTTGTGATTGGTCAGCAAGAGCGGATGCTCAATGGTGCT
AACATTTGGAACCTGCCTGTGTCATACGATAAGCTAGGAGTGAGGTATAGGATATGGAGA
GATGCTGTAGAGAGTGGAGCAAAGCAATTGCCATTCAGCAAATGA

Peptide Sequence

PEP ID

XP_016507310.1
PEP Infomation

PREDICTED: chlorophyllide a oxygenase, chloroplastic-like [Nicotiana tabacum]
Sequence

MSAIATSAALSFPFSFCRSTKTFATRKCFKGGFGVFAVYEEAGELTNKKSSWLTLFDVED
PRSKFPQSKGKFLDANQALEVARFDIQYCDWRARQDVLTIMLLHEKVVEVLNPLAREYKS
IGTMKKELAELQGALSQAHKEVHISEVRVSAALDKLAHMEALVNDRLLPERSAEESDCPS
SSTGTSTVSRDTVKGKQPRRTLNVSGPVQDYSSHLKNFWYPVAFSADVKEDTMTPIDCFE
EPWVIFRGKDGKPGCVRNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTKF
LNVKIKALPCFEQEGMIWIWPGNDPPAATLPSLLPPSGFQIHAEIVIELPVEHGLLLDNL
LDLAHAPFTHTSTFAKGWTVPSFVKFLTPASGLQGYWDPYPIDMEFRPPCIVLSTIGISK
PGKLEGQSTKECSTHLHQLHVCLPASKQKTRLLYRMSLDFAPVLKHIPFMQYVWRHFAEQ
VLNEDLRLVIGQQERMLNGANIWNLPVSYDKLGVRYRIWRDAVESGAKQLPFSK

Transcript Sequence

Gene sequence data has not been registered.